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Generic Model Organism System Database

This project is to develop a set of software modules to be used to develop a generic model organism system database. Such databases contain information about the genomes and biology of laboratory organisms. Generic Model Organism System Database home is here.
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Topics (8373)
Replies Last Post Views Sub Forum
Re: [Gmod-gbrowse] Re: KOG Id in GFF3 file by Scott Cain-2
7
by Jeff Bowes
gmod-schema
bp_load_gff.pl and disappearing glyphs: problem solved? by Amit Indap
0
by Amit Indap
gmod-gbrowse
das2/lib/Bio/Das2/Source ChadoAssay.pm,1.9,1.10 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
make rm_locks by Etienne Noumen
1
by Scott Cain-2
gmod-schema
Fwd: Announcing MySQL 5.0 Release Candidate (fwd) by Chris Mungall
0
by Chris Mungall
gmod-schema
Gbrowse re-installation? by Amit Indap
2
by Scott Cain-2
gmod-gbrowse
KOG Id in GFF3 file by Etienne Noumen
5
by Chris Mungall-2
gmod-gbrowse
SynBrowse by Linda Sperling
1
by Scott Cain-2
gmod-gbrowse
SynBrowse by Linda Sperling
0
by Linda Sperling
gmod-schema
displaying glyphs and debug option Gbrowse by Amit Indap
4
by Amit Indap
gmod-gbrowse
note to self: turn off allele germplasm CRON job: by Danny Yoo-2
0
by Danny Yoo-2
gmod-pubsearch-dv
schema/chado/modules/sequence/gff-bridge sequence-gff-views.sql,1.11,1.12 by scottcain
0
by scottcain
gmod-schema-cmts
Transcript connector lines dissapearing? by Smithies, Russell
2
by Lincoln Stein-2
gmod-gbrowse
Re: gmod_dump & gmod_bulk_load_gff3.pl by Scott Cain-2
3
by Scott Cain-2
gmod-schema
das2/t/conf apache_test_config.pm,1.18,1.19 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/t 03.request.t,1.2,1.3 100_GET_genome_sanity.t,1.2,1.3 101_GET_genome_feature.t,1.2,1.3 102_GET_genome_property.t,1.2,1.3 103_GET_genome_region.t,1.2,1.3 104_GET_genome_sequence.t,1.2,1.3 105_GET_genome_type.t,1.2,1.3 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Controller ControllerI.pm,1.22,1.23 Domain.pm,1.6,1.7 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source ChadoAssay.pm,1.8,1.9 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source/Chado FeatureIterator.pm,1.14,1.15 Type.pm,1.5,1.6 TypeIterator.pm,1.8,1.9 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/SourceFactory ChadoAssay.pm,1.3,1.4 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
All on, All off checkboxes do not appear to work by Wes Barris
3
by Wes Barris
gmod-gbrowse
schema/chado/modules/sequence/gff-bridge sequence-gff-funcs.plpgsql,1.3,1.4 sequence-gff-views.sql,1.10,1.11 by scottcain
0
by scottcain
gmod-schema-cmts
schema/chado/bin gmod_dump_gff3.pl,1.3,1.4 by scottcain
0
by scottcain
gmod-schema-cmts
das2/t/conf extra.conf.in,1.11,1.12 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source Chado.pm,1.28,1.29 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
schema/chado/modules/sequence/gff-bridge sequence-gff-views.sql,1.9,1.10 by scottcain
0
by scottcain
gmod-schema-cmts
gbrowse writing temp files to wrong directory by Geoff Winsor
2
by Geoff Winsor
gmod-gbrowse
Translation glyph by Smithies, Russell
2
by Aaron J. Mackey
gmod-gbrowse
gmod_bulk_load_gff3.pl by Kevin Childs
1
by Scott Cain-2
gmod-schema
gbrowse details by Jason Stajich
2
by Jason Stajich
gmod-gbrowse
correct coordinates - glyphs still not showing up by Amit Indap
1
by Scott Cain-2
gmod-gbrowse
schema/chado/modules/sequence/apollo-bridge apollo-triggers.plpgsql,1.10,1.11 apollo.inserts,1.11,1.12 by scottcain
0
by scottcain
gmod-schema-cmts
DB cross references (NCBI_gi) by Etienne Noumen
3
by Scott Cain-2
gmod-gbrowse
schema/chado/modules/sequence frange.sql,NONE,1.1 by Allen Day-2
0
by Allen Day-2
gmod-schema-cmts
das2/lib/Bio/Das2/SourceFactory Chado.pm,1.7,1.8 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
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