Generic Model Organism System Database

This project is to develop a set of software modules to be used to develop a generic model organism system database. Such databases contain information about the genomes and biology of laboratory organisms. Generic Model Organism System Database home is here.
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Topics (8393)
Replies Last Post Views Sub Forum
das2/t 03.request.t,1.2,1.3 100_GET_genome_sanity.t,1.2,1.3 101_GET_genome_feature.t,1.2,1.3 102_GET_genome_property.t,1.2,1.3 103_GET_genome_region.t,1.2,1.3 104_GET_genome_sequence.t,1.2,1.3 105_GET_genome_type.t,1.2,1.3 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Controller ControllerI.pm,1.22,1.23 Domain.pm,1.6,1.7 by Allen Day-2
0
by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source ChadoAssay.pm,1.8,1.9 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source/Chado FeatureIterator.pm,1.14,1.15 Type.pm,1.5,1.6 TypeIterator.pm,1.8,1.9 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/SourceFactory ChadoAssay.pm,1.3,1.4 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
All on, All off checkboxes do not appear to work by Wes Barris
3
by Wes Barris
gmod-gbrowse
schema/chado/modules/sequence/gff-bridge sequence-gff-funcs.plpgsql,1.3,1.4 sequence-gff-views.sql,1.10,1.11 by scottcain
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by scottcain
gmod-schema-cmts
schema/chado/bin gmod_dump_gff3.pl,1.3,1.4 by scottcain
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by scottcain
gmod-schema-cmts
das2/t/conf extra.conf.in,1.11,1.12 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source Chado.pm,1.28,1.29 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
schema/chado/modules/sequence/gff-bridge sequence-gff-views.sql,1.9,1.10 by scottcain
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by scottcain
gmod-schema-cmts
gbrowse writing temp files to wrong directory by Geoff Winsor
2
by Geoff Winsor
gmod-gbrowse
Translation glyph by Smithies, Russell
2
by Aaron J. Mackey
gmod-gbrowse
gmod_bulk_load_gff3.pl by Kevin Childs
1
by Scott Cain-2
gmod-schema
gbrowse details by Jason Stajich
2
by Jason Stajich
gmod-gbrowse
correct coordinates - glyphs still not showing up by Amit Indap
1
by Scott Cain-2
gmod-gbrowse
schema/chado/modules/sequence/apollo-bridge apollo-triggers.plpgsql,1.10,1.11 apollo.inserts,1.11,1.12 by scottcain
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by scottcain
gmod-schema-cmts
DB cross references (NCBI_gi) by Etienne Noumen
3
by Scott Cain-2
gmod-gbrowse
schema/chado/modules/sequence frange.sql,NONE,1.1 by Allen Day-2
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by Allen Day-2
gmod-schema-cmts
das2/lib/Bio/Das2/SourceFactory Chado.pm,1.7,1.8 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source/Chado/FeatureFilter att.pm,1.4,1.5 contains.pm,1.4,1.5 name.pm,1.4,1.5 overlaps.pm,1.8,1.9 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Controller/Assay Assay.pm,1.1,1.2 Contact.pm,1.1,1.2 Experiment.pm,1.2,1.3 Image.pm,1.1,1.2 Material.pm,1.1,1.2 Platform.pm,1.2,1.3 Protocol.pm,1.1,1.2 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Controller ControllerI.pm,1.21,1.22 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2 Constants.pm,1.11,1.12 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source/Chado FeatureIterator.pm,1.13,1.14 IteratorI.pm,1.2,1.3 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/Source Chado.pm,1.27,1.28 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
das2/lib/Bio/Das2/ControllerFactory Assay.pm,1.1,1.2 Genome.pm,1.1,1.2 by Allen Day-2
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by Allen Day-2
gmod-das2-cmts
Re: Window version of Gbrowser can not recognize GFF3 format by Scott Cain-2
6
by Scott Cain-2
gmod-gbrowse
RE: [Gmod-gbrowse]FastaDumper by Smithies, Russell
3
by Marc Logghe
gmod-gbrowse
Re: Searching in gbrowse can be very slow by Wes Barris
11
by Wes Barris
gmod-gbrowse
incorrect indices when zooming in/out by Amit Indap
4
by Amit Indap
gmod-gbrowse
Re: Ryan Pham's pub changes by Danny Yoo-2
1
by Eva Huala
gmod-pubsearch-dv
Is there a limit on number of features? by Yair Benita-2
2
by Don Gilbert
gmod-gbrowse
Re: Question about gff format by Eurie Hong
2
by Vincenzo Forgetta
gmod-gbrowse
Window version of Gbrowser can not recognize GFF3 format by Liang-Chuan Lai
1
by Scott Cain-2
gmod-gbrowse
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