Re: [Gmod-tripal] Error with gmod_bulk loader

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Re: [Gmod-tripal] Error with gmod_bulk loader

Scott Cain
Hi Hrishikesh,

This question really should go on the schema mailing list. I've cc'ed it here.

Do you have BioPerl installed?  What version?

Sent from my iPhone

> On Apr 10, 2014, at 3:09 PM, "Hrishikesh A. Lokhande" <[hidden email]> wrote:
>
> Hello All,
>
> I am trying to load a gff file into my database using gmod_bulk_load_gff3.pl script.
>
> The code fails with the following error:
>
> Preparing data for inserting into the drupal database
> (This may take a while ...)
> Can't locate object method "get_Annotations" via package "Bio::SeqFeature::Annotated" at /usr/local/share/perl/5.14.2/Bio/SeqFeature/Annotated.pm line 287, <GEN0> line 3.
>
> Abnormal termination, trying to clean up...
>
> Trying to remove the run lock (so that --remove_lock won't be needed)…
>
> Any idea whats wrong with the Annotated.pm?
>
>
>
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